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A roadmap for caGrid, an enterprise Grid architecture for biomedical research

Joel Saltz, Shannon Hastings, Stephen Langella, Scott Oster, Tahsin Kurc, Philip Payne, Renato Ferreira, Beth Plale, Carole Goble, David Ervin, Ashish Sharma, Tony Pan (+8 others)
2008 Studies in Health Technology and Informatics  
This summary is based on discussions at a roadmap workshop held in February with participants from biomedical research, Grid computing, and high performance computing communities.  ...  This paper provides an overview of potential future architecture and tooling directions and areas of improvement for caGrid and caGrid-like systems.  ...  A Roadmap for caGrid-like Biomedical Informatics Systems In this section, we present an overview of potential architecture and tooling directions for caGrid like systems, describe potential areas of improvement  ... 
pmid:18560123 pmcid:PMC3292259 fatcat:mv6gnc5kbffdhawd44gy4ykxgq

Publication and consumption of caBIG data services using .NET

Marty Humphrey, Jie Li, Norm Beekwilder
2010 Concurrency and Computation  
The cancer Biomedical Informatics Grid (caBIG) is revolutionizing the way medical researchers share information and collaborate. A key to caBIG's continued success will be interoperability.  ...  We find ADO.NET Data Services has a uniquely strong potential to facilitate rapid development and deployment. We conclude with a discussion of the roadmap of our project's future activities.  ...  Because caBIG's goal is to be a comprehensive, inclusive system for biomedical research, .NET was chosen to explore as a second significant platform. .NET and Visual Studio are an extremely popular platform  ... 
doi:10.1002/cpe.1599 fatcat:w3pxc4txgrdsbnlteo43ynz3ee

The cancer translational research informatics platform

Patrick McConnell, Rajesh C Dash, Ram Chilukuri, Ricardo Pietrobon, Kimberly Johnson, Robert Annechiarico, A Jamie Cuticchia
2008 BMC Medical Informatics and Decision Making  
Results: caTRIP has been developed as an N-tier architecture, with three primary tiers: domain services, the distributed query engine, and the graphical user interface, primarily making use of the caGrid  ...  In line with its mission of accelerating research discoveries and improving patient outcomes by linking networks of researchers, physicians, and patients focused on cancer research, caBIG (cancer Biomedical  ...  NIH Roadmap for Medical Research.  ... 
doi:10.1186/1472-6947-8-60 pmid:19108734 pmcid:PMC2626590 fatcat:72b3un6g25abpiotif4n2ceqwq

Software Architecture and Engineering for Patient Records: Current and Future

Chunhua Weng, Betty A. Levine, Seong K. Mun
2009 Military medicine  
Tahsin Kurc introduced a grid computing example: The Cancer Biomedical Informatics Grid (caBIG). 19 In caBIG, a specialized caGrid grid service provider can run data through a common query interface  ...  An enterprise must explicitly plan for, encourage, and monitor a reuse plan.  ... 
doi:10.7205/milmed-d-03-9608 fatcat:yktndsj5zfczhpa24rthojcvpu

A Novel Knowledge Representation Framework for the Statistical Validation of Quantitative Imaging Biomarkers

Andrew J. Buckler, David Paik, Matt Ouellette, Jovanna Danagoulian, Gary Wernsing, Baris E. Suzek
2013 Journal of digital imaging  
A framework to support collaborative work on quantitative imaging biomarkers would entail advanced statistical techniques, the development of controlled vocabularies, and a service-oriented architecture  ...  We report on our current progress on developing an informatics infrastructure to store, query, and retrieve imaging biomarker data across a wide range of resources in a semantically meaningful way that  ...  Table 3 Discovered data is represented as an extension to the triples that form the specification, linking terms to specific instances Portions of the current Biomedical Research Integrated Domain Group  ... 
doi:10.1007/s10278-013-9598-3 pmid:23546775 pmcid:PMC3705009 fatcat:nkllru5k7fgbhb4bawn6zbllpq

Serving the enterprise and beyond with informatics for integrating biology and the bedside (i2b2)

S. N. Murphy, G. Weber, M. Mendis, V. Gainer, H. C. Chueh, S. Churchill, I. Kohane
2010 JAMIA Journal of the American Medical Informatics Association  
Glaser and Diane Keogh for contributions and support.  ...  Acknowledgments The contributions of Rajesh Kuttan, Lori Phillips, Wensong Pan, and Janice Donahue have been invaluable for the construction and distribution of this software, and by John P.  ...  In this way the architecture is similar to that of the cancer Biomedical Informatics Grid (caBIG). 14 However, unlike caBIG, the core data in i2b2 is instantiated according to a single relational model  ... 
doi:10.1136/jamia.2009.000893 pmid:20190053 pmcid:PMC3000779 fatcat:p6vbqagrybdk5hx3vjeh2pvw7q

AN ASSESSMENT OF THE IMPACT OF THE NCI CANCER BIOMEDICAL INFORMATICS GRID (caBIG ® ) Ad hoc Working Group on the NCI Cancer Biomedical Informatics Grid (caBIG ® ) Program

Andrea Califano, Arul Chinnaiyan, Geoffrey Duyk, Managing Director, Tpg Biotech, San Francisco, Sanjiv Gambhir, D Virginia, Ludwig, Tim Hubbard, David Lipman, Lincoln Stein (+3 others)
2011 unpublished
Similarly, enormous effort was devoted to the development of caGRID ($9.8M), an environment for grid-based cloud computing, but the WG did not find evidence that it has empowered a new class of tools to  ...  The caBIG ® program has increased awareness throughout the biomedical research community of the need for and potential benefits of service oriented architectures, semantic interoperability platforms, and  ... 

Establishing Community and Research Trust in Public Health Using Service-Oriented Architecture (SOA) ESTABLISHING COMMUNITY AND RESEARCH TRUST IN PUBLIC HEALTH USING SERVICE-ORIENTED ARCHITECTURE (SOA)

Sjsu Scholarworks, Juanita Mah, Juanita Mah, Juanita Mah, Juanita Mah, Weider Yu, Jerry Gao, Xiao Su, Harini Srinivasan, Juanita Mah
2010 unpublished
To that end, they created the Cancer Biomedical Informatics Grid (caBIG) [38].  ...  First, this study will demonstrate how an SOA approach can be used to define an architectural solution for a general problem domain, i.e., the clinical trials process, rather than for a specific enterprise  ...  SOMA Service-Oriented Modeling and Architecture. This is a methodology developed by IBM for defining and implementing an SOA.  ... 

Reinforcement Learning (Dagstuhl Seminar 13321) The Critical Internet Infrastructure (Dagstuhl Seminar 13322) Coding Theory (Dagstuhl Seminar 13351) Interaction with Information for Visual Reasoning (Dagstuhl Seminar 13352)

Peter Auer, Marcus Hutter, Laurent, Georg Carle, Jochen Schiller, Steve Uhlig, Walter Willinger, Matthias Wählisch, Thore Husfeldt, Ramamohan Paturi, Gregory Sorkin, Ryan Williams (+14 others)
We gratefully acknowledge the Dagstuhl staff for helping on all administrative coordination, for their patience, and most importantly for providing an extremely inspiring environment.  ...  Biological OFF rate can be studied, OFF rate is the time for A and B to stay attached. Then, they dissociate. Should attach long enough and go to the membrane for reaction.  ...  It is developing a roadmap for the Digital Patient and has the potential to fund research projects.  ...