A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2017; you can also visit the original URL.
The file type is application/pdf.
Filters
Two interactive Bioinformatics courses at the Bielefeld University Bioinformatics Server
2008
Briefings in Bioinformatics
Preserved Fulltext
The Bielefeld Bioinformatics Server (BiBiServ) offers a variety of older and new materials. ...
Here, we report on two online courses made available recently, one introductory and one on the advanced level: (i) SADR: Sequence Analysis with Distributed Resources ...
This work was supported by grant BIZ 7 from the DFG-Initiative Bioinformatics. ...
doi:10.1093/bib/bbm063
pmid:18199576
fatcat:dxmlozvc2rbhrfgpk6wiw2lsz4
Bioinformatics core competencies for undergraduate life sciences education
2018
PLoS ONE
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2019; you can also visit the original URL.
The file type is application/pdf.
These core competencies are intended to serve as a guide for institutions as they work to integrate bioinformatics into their life sciences curricula. ...
Finally, we used the survey results, the analysis of the syllabi, and our collective research and teaching expertise to develop a set of bioinformatics core competencies for undergraduate biology students ...
The authors also thank Sarah Moulton of Moulton Editorial Services (Omaha, Nebraska) for editing and formatting the final version of the manuscript. ...
doi:10.1371/journal.pone.0196878
pmid:29870542
pmcid:PMC5988330
fatcat:niuaiwdqwffpfoevfgh2trt4km
Benchmarking workflow discovery: a case study from bioinformatics
2009
Concurrency and Computation
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2009; you can also visit the original URL.
The file type is application/pdf.
To address their perceived lack of effective workflow discovery tools, we go on to develop benchmarks for the evaluation of discovery tools, drawing on a series of practical exercises. ...
Based on a survey with participants from 19 laboratories, we investigate current practices in workflow sharing, re-use and discovery amongst life scientists chiefly using the Taverna workflow management ...
Acknowledgment The authors are grateful to the Taverna training days participants, the myGrid team, the myExperiment team and Luna Dong for the Woogle source code. We also thank the ...
doi:10.1002/cpe.1447
fatcat:ck6dott5g5dnvjl5rttrhevy7y
Experiential Learning in Bioinformatics – Learner Support for Complex Workflow Modelling and Analysis
2018
International Journal of Emerging Technologies in Learning (iJET)
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2019; you can also visit the original URL.
The file type is application/pdf.
One of the challenging areas for a student learning in bioinformatics is complex workflow modelling and analysis; it incorporates several threshold concepts and liminal spaces for student learning, which ...
Better learning engagement during the experiment, better performance at advanced questions and a positive user response were observed from the students who used BioWorkflow tool, compared to the control ...
The questions Q2 to Q6 are based on the theoretical knowledge the students have learnt whereas questions Q7 to Q10 examined the advanced skills that a student can apply their knowledge into a practical ...
doi:10.3991/ijet.v13i12.8608
fatcat:vtlq4fjfizet3bim7jl7zntrsq
The Enzyme Portal: a case study in applying user-centred design methods in bioinformatics
2013
BMC Bioinformatics
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2017; you can also visit the original URL.
The file type is application/pdf.
To address this we describe a complete, multi-stage UCD process used for creating a new bioinformatics resource for integrating enzyme information, called the Enzyme Portal (http://www.ebi.ac.uk/enzymeportal ...
For bioinformatics, there is little practical information available regarding how to carry out UCD in practice. ...
After selecting a number of data items users had to democratically vote to keep only six using the dot voting method [as described in [29] ). This was the prioritisation task of the exercise. ...
doi:10.1186/1471-2105-14-103
pmid:23514033
pmcid:PMC3623738
fatcat:lq4k3fmy45fsdmf5c7vjhxdt6u
Bioinformatics Core Competencies for Undergraduate Life Sciences Education
[article]
2017
bioRxiv
pre-print
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2019; you can also visit the original URL.
The file type is application/pdf.
These core competencies are intended to serve as a guide for institutions as they work to integrate bioinformatics into their life sciences curricula. ...
Finally, we used the survey results, the analysis of syllabi, and our collective research and teaching expertise to develop a set of bioinformatics core competencies for undergraduate life sciences students ...
Acknowledgements This material is based upon work supported by the National Science Foundation under Grant Number 1539900 to A.G.R., E.W.T., E.D., W.M., and M.A.P. ...
doi:10.1101/170993
fatcat:rp35gxmb7jbfbc5uoboquzduhu
A Bioinformatics Practicum to Develop Student Understanding of Immunological Rejection of Protein Drugs
2016
American Journal of Pharmaceutical Education
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2020; you can also visit the original URL.
The file type is application/pdf.
To design and implement a bioinformatics exercise that applies immunological principles to predicting rejection of protein drugs based upon patient genotype. Design. ...
This study indicates that questions related to clinical immunology can be posed using bioinformatics tools. ...
As science curriculum standards move toward problem-based and inquiry-based laboratory design, this exercise provides an opportunity to ask questions about the interactions of an important class of drugs ...
doi:10.5688/ajpe809147
pmid:28090096
pmcid:PMC5221830
fatcat:u6vysclxafcyxizllbcpnkmvqe
Dive in!
2014
Proceedings of the 32nd annual ACM conference on Human factors in computing systems - CHI '14
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2015; you can also visit the original URL.
The file type is application/pdf.
Figure 1: The Splash framework enables real-time navigation for client-server visualization systems by progressively loading data. ...
Splash streamlines the process of creating a multiple level-of-detail version of the data and facilitates progressive data download, thereby enabling real-time, on-demand navigation with existing visualization ...
ACKNOWLEDGEMENTS We would like to thank our reviewers, study participants, John Hancock, Katie Barker, John Stasko, and fellow DGP members for their insightful feedback. ...
doi:10.1145/2556288.2557195
dblp:conf/chi/GlueckKW14
fatcat:jacef3xfxrdgrpgn6fyngt72ai
11.1 Deliver The Identified Evaluation Systems And Good Practice Guidelines For Training. Deliver A Tess Platform And Identify E-Learning Solutions
2018
Zenodo
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2020; you can also visit the original URL.
The file type is application/pdf.
It describes the achievements within the Task 11.1 of the WP11, Building the ELIXIR infrastructure. The deliverable in fact touches upon 3 subtasks (11.1.1, 11.1.2 and 11.1.3). ...
This document (D11.1 - Deliver the identified evaluation systems and good practice guidelines for training. ...
Each module includes a series of questions or 'Reflections' to provoke critical thinking about the tasks trainees have completed. ...
doi:10.5281/zenodo.1453020
fatcat:cqcpoyz26ngcdh646mc2nwewyi
Developing an online programme in computational biology
2012
Briefings in Bioinformatics
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2017; you can also visit the original URL.
The file type is application/pdf.
Although this flexible approach fits the needs of course participants, it does not fit easily within the organizational structures of a campus-based university. ...
Much has been written about the need for continuing education and training to enable life scientists and computer scientists to manage and exploit the different types of biological data now becoming available ...
For example, our course in microarray data analysis is based around a series of exercises using Bioconductor [11] . ...
doi:10.1093/bib/bbs059
pmid:22988255
fatcat:c6ntzyl4afb2fahz4gsvptjp7i
Usability and Suitability of the Omics-Integrating Analysis Platform tranSMART for Translational Research and Education
2017
Applied Clinical Informatics
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2019; you can also visit the original URL.
The file type is application/pdf.
The test comprised 13 tasks in the context of four typical research scenarios based on experimental and clinical data. ...
A web questionnaire was provided to identify both the needs and the conditions of research as well as to evaluate the system's usability based on the "System Usability Scale" (SUS). ...
Acknowledgments The researchers who participated in this study are gratefully acknowledged for their precious time and effort. We also thank S. Newe and A. ...
doi:10.4338/aci-2017-05-ra-0085
pmid:29270954
pmcid:PMC5802312
fatcat:amrlgu6r6ff4nivevttuj7onma
Transparent access to multiple bioinformatics information sources
2001
IBM Systems Journal
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2006; you can also visit the original URL.
The file type is application/pdf.
motif1)I \protein3 <-get-sp-entries-by-de("lard"), \protein2 <-do-blastp-by-sq-in-entry(protein3), Check-sp-entries-by-kwd("apoptosis",protein2), check-sp-entries-by-de("antigen",protein2), Check-sp-entry-for-species ...
We are grateful for his contribution. **Trademark or registered trademark of Sun Microsystems, Inc., or Object Management Group. ...
Acknowledgments This work is supported by the BBSRC/EPSRC Bioinformatics Programme grant BIF/05344, by AstraZeneca Pharmaceuticals, and by EPSRC grant GR/M76607 under the DIM initiative. ...
doi:10.1147/sj.402.0532
fatcat:5xnmkl2fvber3hyo3kmbn27pka
A Survey of Transfer and Multitask Learning in Bioinformatics
2011
Journal of Computing Science and Engineering
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2017; you can also visit the original URL.
The file type is application/pdf.
In this article, we survey recent advances in transfer and multitask learning for bioinformatics applications. ...
Machine learning and data mining have found many applications in biological domains, where we look to build predictive models based on labeled training data. ...
These works included regularization based methods, common feature representation based methods, distribution matching methods and their variants. ...
doi:10.5626/jcse.2011.5.3.257
fatcat:oruxwutza5godismndbqad2lm4
From command-line bioinformatics to bioGUI
2019
PeerJ
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2019; you can also visit the original URL.
The file type is application/pdf.
Bioinformatics is a highly interdisciplinary field providing (bioinformatics) applications for scientists from many disciplines. ...
Providing a graphical user interface (GUI) for bioinformatics applications is one step toward routinely making CL-only applications available to more scientists and, thus, toward a more effective interdisciplinary ...
Jimenez-Soto and Gergely Csaba for their valuable input as well as for reviewing the manuscript. We thank the participants in our survey for their time. ...
doi:10.7717/peerj.8111
pmid:31772845
pmcid:PMC6875409
fatcat:lwvurr4fvzdvvf5xcdfzpy7xqi
The development and application of bioinformatics core competencies to improve bioinformatics training and education
2018
PLoS Computational Biology
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2018; you can also visit the original URL.
The file type is application/pdf.
The Curriculum Task Force of the International Society of Computational Biology (ISCB) Education Committee has sought to provide a framework for training needs and curricula in terms of a set of bioinformatics ...
Bioinformatics is recognized as part of the essential knowledge base of numerous career paths in biomedical research and healthcare. ...
As a proof of principle for ELIXIR, Europe's distributed infrastructure for biological data with nodes in 20 countries, EMBL-EBI and UCAM recently performed an exercise to map their course programmes to ...
doi:10.1371/journal.pcbi.1005772
pmid:29390004
pmcid:PMC5794068
fatcat:reaf6wxitjfbhfofxk3ipw77s4
« Previous
Showing results 1 — 15 out of 1,253 results