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A method for indexing biomedical resources over the internet

Guillermo de la Calle, Miguel Garcia-Remesal, Victor Maojo
2008 Studies in Health Technology and Informatics  
A large number of biomedical resources are publicly available over the Internet. This number grows every day.  ...  In this paper we propose a novel method for extracting information from the literature and create a Resourceome, i.e. an index of biomedical resources (databases, tools and services) in a semi-automatic  ...  Acknowledgments The present work has been funded by the Ministry of Education, Spain (OntoMineBase project, reference TSI2006-13021-C02-01) and the E.C.  ... 
pmid:18487725 fatcat:2rqnsv4qc5agdd7ztdjaqhu62e

BioWareDB: the biomedical software and database search engine

M. W. Matthiessen
2003 Bioinformatics  
and easily searchable index of all these resources.  ...  A wealth of bioinformatics tools and databases has been created over the last decade and most are freely available to the general public.  ...  relevant database for a specific biocomputing task through either PubMed or a general Internet search tool.  ... 
doi:10.1093/bioinformatics/btg306 pmid:14630664 fatcat:ikq727e775csdfl53ey3j4r5p4

Medical Informatics Research and Training at the Lister Hill National Center for Biomedical Communications

A.T. McCray
2000 IMIA Yearbook of Medical Informatics  
Indexing Initiative The indexing initiative project is investigating methods whereby auto-96 mated indexing methods may partially or completely substitute for expert indexing of the biomedical literature  ...  The Doc View project involves research in advanced technologies for document delivery over the Internet.  ... 
doi:10.1055/s-0038-1637947 fatcat:djfi2wvxerbatahehefdvkqnxy an open access medical education web portal

Vangelis G Alexiou, Matthew E Falagas
2008 BMC Medical Education  
Methods: Directories of the relevant WWW resources have been compiled and others are being currently under development to cover most medical fields. A custom-built medical search engine was created.  ...  Internet can serve in opening the door to a brand new world of high quality medical information. However, the chaotic size of data available in the WWW is often misleading.  ...  Acknowledgements Internals funds of the Alfa Institute of Biomedical Sciences were used for the development of and this article.  ... 
doi:10.1186/1472-6920-8-6 pmid:18218119 pmcid:PMC2245936 fatcat:gf6a7a5jqnhtdoozwj6gt7idla

Informatics Research, Development, and Training at the Lister Hill National Center for Biomedical Communications

A. T. McCray
2003 IMIA Yearbook of Medical Informatics  
Acknowledgments I would like to thank all Lister Hill Center research staff for their contributions to the content of this report.  ...  The Indexing Initiative project explores concept-based indexing methods.  ...  semi-automated techniques for indexing the biomedical literature.  ... 
doi:10.1055/s-0038-1638162 fatcat:6tfw2xpcuff27am4aitytgf7ha

Drug Information Resources at Private Community Pharmacies in Kuwait

Douglas E. Ball, Fatma Al-Othman
2007 Medical Principles and Practice  
The Middle East Medical Index was most commonly found and three pharmacies had internet access.  ...  Materials and Methods: Pharmacists at a sample of 20 private community (retail) pharmacies completed a self-administered questionnaire of available information resources and perceived appropriate information  ...  Methods A self-administered questionnaire was designed to record information resources available in the pharmacy.  ... 
doi:10.1159/000098361 pmid:17303944 fatcat:fdjt4kjbdzfrbjslh4calnrmje

Biomedical Web, Collections and Meta-Analysis Literature Applications [chapter]

Layla Michan, Israel Munoz-Velasco, Eduardo Alvarez, Lyssania Macias
2011 Biomedical Engineering - From Theory to Applications  
Electronic resources with biomedical literature can be consulted electronically Internet allows instant access to digital data collections updated with information generated by the Biomedical  ...  Geographic coverage: Generally not be selected for indexing if the contents are subjects already well represented in MEDLINE or published to a local audience. Records meta-analysis* No Tools My NCBI.  ...  Twease Twease is a web-based tool to search in the abstracts for Medline. Index the words of Medline and provides features to expand a query and thereby find what you are looking for.  ... 
doi:10.5772/18133 fatcat:cjogvh6gindgbabo3aqh6qetyu

Characteristics of reference transactions--challenges to librarians' roles

J Li, G Wu
1998 Bulletin of the Medical Library Association  
The Web was separated from other Internet applications due to the increasing preference for the Web over other Internet applications.  ...  and knowledge of the Internet and its resources, especially the Web.  ...  The Web was separated from other Internet applications due to the increasing preference for the Web over other Internet applications.  ... 
pmid:9803307 pmcid:PMC226458 fatcat:hup5keyxufasbgifrpnvgj5blm

Organizing Electronic Information to Serve the Needs of Health Practitioners and Customers

Eve-Marie Lacroix, Joyce E. B. Backus
2006 Library Trends  
Today, NLM is a leader in providing electronic biomedical information to health professionals, researchers, the public, and anyone else with access to the Internet.  ...  From its beginnings as the Library of the Army Surgeon General to today's Internet-driven information environment, the U.S. National Library of Medicine (NLM) has served a variety of audiences.  ...  The library printed Index Medicus and others for over a century.  ... 
doi:10.1353/lib.2006.0038 fatcat:d2mfdw5ivfa6tjklrl3zx7kjwu

Democratizing data science through data science training

John Darrell Van Horn, Lily Fierro, Jeana Kamdar, Jonathan Gordon, Crystal Stewart, Avnish Bhattrai, Sumiko Abe, Xiaoxiao Lei, Caroline O'Driscoll, Aakanchha Sinha, Priyambada Jain, Gully Burns (+2 others)
2018 Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing  
ERuDIte now indexes over 9,500 resources.  ...  Here, we describe the activities of the BD2K TCC and its focus on the construction of the Educational Resource Discovery Index (ERuDIte), which identifies, collects, describes, and organizes online data  ...  Any opinions, findings, and conclusions expressed in this material are those of the authors and do not necessarily reflect the views of the National Institutes of Health.The authors would also like to  ... 
pmid:29218890 pmcid:PMC5731238 fatcat:k6cv3tl76vaihkvvpt3tyby54a

BioMetaDB: Ontology-based Classification and Extension of Biodatabases

Ching-Fen Chang, Chang-Hsien Lin, Chuan-Hsiung Chang
2014 Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms  
Based on biomedical ontologies, we indexed all the databases by their relevant biological features, and further evaluated the relevance among the databases.  ...  Our BioMetaDB, a comprehensive compendium of biological databases, is currently integrated from over 1,500 digital sources.  ...  INTRODUCTION The growing amounts of biomedical databases, highthroughput biological data and computational tools are driving the need for more effective methods for database indexing, searching, and understanding  ... 
doi:10.5220/0004801001560163 dblp:conf/biostec/ChangLC14 fatcat:h5drlsgthfhcnfylmmrzw6tlem

Navigating the Internet

S M Powsner, N K Roderer
1994 Bulletin of the Medical Library Association  
A major shortcoming of the present Internet navigation methods is the lack of controlled descriptions of the available resources. As a result, navigating the Internet is very difficult.  ...  Navigating any complex set of information resources requires tools for both browsing and searching. A number of tools are available today for using Internet resources, and more are being developed.  ...  A major shortcoming of the present Internet navigation methods is the lack of controlled descriptions of the available resources. As a result, navigating the Internet is very difficult.  ... 
pmid:7841913 pmcid:PMC225968 fatcat:zu5br2p7affbvdni564gwp7v3q

Biomedical Informatics on the Cloud

Peipei Ping, Henning Hermjakob, Jennifer S. Polson, Panagiotis V. Benos, Wei Wang
2018 Circulation Research  
In the digital age of cardiovascular medicine, the rate of biomedical discovery can be greatly accelerated by the guidance and resources required to unearth potential collections of knowledge.  ...  This review takes the opportunity to present an overview of the cloud-based computational environment, including the functional roles of metadata, the architecture schema of indexing and search, and the  ...  Ding Wang and Bilal Mirza, as well as Anders Garlid, Chelsea Ju, Jessica Lee, Zeyu Li, Patrick Tan, and Justin Wood at the University of California, Los Angeles (UCLA) for their critical input on the content  ... 
doi:10.1161/circresaha.117.310967 pmid:29700073 pmcid:PMC6192708 fatcat:kekqc3gegvcc3hm56xzw3cosmu

Multiple Terminologies in a Health Portal: Automatic Indexing and Information Retrieval [chapter]

Stéfan J. Darmoni, Suzanne Pereira, Saoussen Sakji, Tayeb Merabti, Élise Prieur, Michel Joubert, Benoit Thirion
2009 Lecture Notes in Computer Science  
Acknowledgments This research was partially supported by the European Union funded project  ...  Among several quality-controlled health gateways, CISMeF ([French] acronym for Catalog and Index of French Language Health Resources on the Internet) was designed to catalog and index the most important  ...  In August 2006, the CISMeF team decided to use this algorithm in the daily practice for most of the Internet resources rated as low priority resources (except guidelines which are still manually indexed  ... 
doi:10.1007/978-3-642-02976-9_37 fatcat:7nlslwtfqzdgdfxqroo3z5qlta

Use of Semantic Web Technologies and Multilinguistic Thesauri for Knowledge-Based Access to Biomedical Resources

Anatoly Gladun, Julia Rogushina
2012 International Journal of Intelligent Systems and Applications  
For more relevant informational retrieval and matching of user request with metadata about biomedical informational recourses it is necessary to formulize the user knowledge about this subject domain.  ...  The algorithms of formation and normalization of the multilinguistic thesauruses, and also methods of their comparison are given in this work.  ...  The multimedia resources are accessible for indexation much worse than textual information. Therefore for multimedia IRs only the second way is efficient.  ... 
doi:10.5815/ijisa.2012.01.02 fatcat:wno7h7hw5ja3pgwo7w3gpd2a7u
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