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A deformable brodmann area atlas

P.E. Rasser, P.J. Johnston, P.B. Ward, P.M. Thompson
2004 2nd IEEE International Symposium on Biomedical Imaging: Macro to Nano (IEEE Cat No. 04EX821)  
Based on a sulcal pattern matching approach [11] , an N=27 scan single subject atlas (the Colin Holmes atlas [15]) with associated Brodmann areas labeled on its surface, was deformed to match 3D cortical  ...  The deformed Brodmann areas were used to quantify and localize functional MRI (fMRI) BOLD activation during the performance of the Tower of London task [7] .  ...  CONCLUSIONS AND FUTURE WORK We have described a deformable Brodmann area atlas method that allows visual and tabular quantification of individual and group structural and functional data.  ... 
doi:10.1109/isbi.2004.1398559 fatcat:4jxw5ghex5fshjrep36m7edc2q

Page 18 of Behavior Research Methods Vol. 34, Issue 1 [page]

2002 Behavior Research Methods  
The ABLe relies on spatial relation¬ ships between the lesion and Brodmann areas, while a neuroanatomist uses landmarks, such as the central gyrus and Sylvian fissure.  ...  The Damasio templates were prepared by referring to Brodmann’s atlas (Brodmann, 1909) and other sources.  ... 

Using the talairach atlas with the MNI template

Matthew Brett, Kalina Christoff, Rhodri Cusack, Jack Lancaster
2001 NeuroImage  
It is common for such studies to report activation coordinates and estimated Brodmann areas (BAs) in terms of the 1988 atlas of Talairach and Tournoux.  ...  This poster describes the differences between the atlas and MNI template, and presents an automated non-linear transform to convert a coordinate for one brain to the corresponding point in the other.  ...  Such regions of interest can be important in reducing the multiple comparison problem when there is a clear hypothesis about a given Brodmann area.  ... 
doi:10.1016/s1053-8119(01)91428-4 fatcat:fwnfep5ypng77iv2dfb2yehngi

Automated Tumor Segmentation and Brain Mapping for the Tumor Area [article]

Pranay Manocha, Snehal Bhasme, Tanvi Gupta, BK Panigrahi, Tapan K. Gandhi
2017 arXiv   pre-print
The tumors were segmented using Fuzzy C Means Clustering and Brodmann area detection was done using a known template, mapping each area to the segmented tumor image.  ...  In this proposed work, a novel two steps GUI technique for brain tumor segmentation as well as Brodmann area detec-tion of the segmented tumor is proposed.  ...  For each hemisphere a database of different Brodmann areas was created for each slice by masking each Brodmann area using a known template. Brodmann Area Detection.  ... 
arXiv:1710.11121v1 fatcat:jqli4hjw6zcebecdfrl5f3xzne

What is where and why it is important

Arthur W. Toga, Paul M. Thompson
2007 NeuroImage  
The notion of an atlas is, among other things, to help with this localization.  ...  Atlases such as the (Talairach and Tournoux, 1988) are woefully inadequate as an anatomic reference but did encourage the use and further development of spatial  ...  areas without any principled method to transfer atlas labels onto incoming data.  ... 
doi:10.1016/j.neuroimage.2007.02.018 pmid:17720552 pmcid:PMC2227945 fatcat:qif5poxsanetrbdwlvtchi3kki

A locus-driven mechanism for rapid and automated atlas-assisted analysis of functional images by using the Brain Atlas for Functional Imaging

Wieslaw L. Nowinski, Arumugam Thirunavuukarasuu
2003 Neurosurgical Focus  
It enables loading of anatomical and functional data, correlation of these data, identification of activation loci, and their labeling with Brodmann areas, gyri, and subcortical structures by means of  ...  In this study the authors propose a novel approach to this problem by using an electronic brain atlas in conjunction with a locus-driven mechanism. Methods.  ...  brain atlas in axial, coronal, and sagittal orientations, as well as Brodmann areas 1 and gyri in axial orientation.  ... 
doi:10.3171/foc.2003.15.1.3 pmid:15355005 fatcat:xyk2x5hztredxgxst6oe4gh3zm

Spherical Demons: Fast Surface Registration [chapter]

B. T. Thomas Yeo, Mert Sabuncu, Tom Vercauteren, Nicholas Ayache, Bruce Fischl, Polina Golland
2008 Lecture Notes in Computer Science  
We validate the technique in two different settings: (1) parcellation in a set of in-vivo cortical surfaces and (2) Brodmann area localization in ex-vivo cortical surfaces.  ...  By exploiting spherical vector spline interpolation theory, we show that a large class of regularizers for the modified demons objective function can be efficiently implemented on the sphere using convolution  ...  Thomas Yeo is funded by the A*STAR, Singapore.  ... 
doi:10.1007/978-3-540-85988-8_89 fatcat:vu46yjdenrfenh3wtc3gxz5ci4

Quantification of brain lesions using interactive automated software

Milan Makale, Jeffrey Solomon, Nicholas J. Patronas, Adrian Danek, John A. Butman, Jordan Grafman
2002 Behavoir research methods, instruments & computers  
The ABLe is almost completely automated and determines the brain lesion size as well as which cytoarchitectonic brain regions (Brodmann areas) are contained within the boundaries of the lesion.  ...  All images are analyzed and displayed within standard Talairachcoordinate space, and the precision of the match between the ABLe Brodmann area graphics and the subject/patient brain is easily confirmed  ...  This work combines digitized and labeled general atlases with cortical and sulcal atlases, but unfortunately Brodmann areas cannot be precisely warped to match slices from a subject's brain, and the intersection  ... 
doi:10.3758/bf03195419 pmid:12060992 fatcat:xxzbdhtdhrajbkux6atrxhapa4

Spherical Demons: Fast Diffeomorphic Landmark-Free Surface Registration

B.T.T. Yeo, M.R. Sabuncu, T. Vercauteren, N. Ayache, B. Fischl, P. Golland
2010 IEEE Transactions on Medical Imaging  
We validate the technique in two different applications that use registration to transfer segmentation labels onto a new image: (1) parcellation of in-vivo cortical surfaces and (2) Brodmann area localization  ...  The Spherical Demons algorithm can also be modified to register a given spherical image to a probabilistic atlas.  ...  The lowest errors for each Brodmann area are shown in bold. We see that for almost all Brodmann areas, the best alignment come from SD10 or SD40.  ... 
doi:10.1109/tmi.2009.2030797 pmid:19709963 pmcid:PMC2862393 fatcat:upevg52ygndo3n2hcpo5ebg6ki

User-friendly software for the analysis of brain lesions (ABLe)

Jeffrey Solomon, Vanessa Raymont, Allen Braun, John A. Butman, Jordan Grafman
2007 Computer Methods and Programs in Biomedicine  
Brodmann areas). Since our previous publication, there have been significant improvements to this software package which utilize methods standard to the neuroimaging community.  ...  spatial normalization to the MNI template brain (standard of the International Consortium for Brain Mapping), and use of the Volume Occupancy Talairach Labels (VOTL) and Automated Anatomical Labeling (AAL) atlases  ...  similar Brodmann area involvement.  ... 
doi:10.1016/j.cmpb.2007.02.006 pmid:17408802 pmcid:PMC1995425 fatcat:wla4f5scebeexovf552h3nltym

Mapping Cortical Thickness of the Patients with Unilateral End-Stage Open Angle Glaucoma on Planar Cerebral Cortex Maps

Piotr Bogorodzki, Ewa Piątkowska-Janko, Jerzy Szaflik, Jacek Paweł Szaflik, Mira Gacek, Paweł Grieb, Maurice Ptito
2014 PLoS ONE  
Statistically significant differences form 600 mm 2 clusters located in the Brodmann area BA19 in the left and right hemisphere.  ...  For each participant 3D high-resolution structural brain T1-weighted magnetization prepared MR images were acquired on a 3.0 T scanner.  ...  And the third atlas is the PALS-B12.Brodmann Atlas with 82 cortical structures (41 structures for each hemisphere).  ... 
doi:10.1371/journal.pone.0093682 pmid:24709970 pmcid:PMC3977872 fatcat:ddvkunenkfhehntujw5y6aoq64

Parcellations and Hemispheric Asymmetries of Human Cerebral Cortex Analyzed on Surface-Based Atlases

D. C. Van Essen, M. F. Glasser, D. L. Dierker, J. Harwell, T. Coalson
2011 Cerebral Cortex  
We implemented a method to register individual subjects to a hybrid version of the FreeSurfer "fsaverage" atlas whose left and right hemispheres are in precise geographic correspondence.  ...  The total number of human neocortical areas is estimated to be ~150 to 200 areas per hemisphere, which is modestly larger than a recent estimate for the macaque.  ...  Orban, A. Brewer, B. Wandell, D. Tsao, J. Swisher, S. Pitzalis, and H. Burton for providing data sets used to map cortical parcellations to atlas surfaces. Conflict of Interest : None declared.  ... 
doi:10.1093/cercor/bhr291 pmid:22047963 pmcid:PMC3432236 fatcat:xb4men7hgjggjn42sw4c3mjzzy

Functional Parcellation of the Lateral Mesencephalus

C. Karachi, A. Andre, E. Bertasi, E. Bardinet, S. Lehericy, F. A. Bernard
2012 Journal of Neuroscience  
The mesencephalic locomotor region (MLR), which includes the pedunculopontine nucleus (PPN) and the cuneiform nucleus (CN), has been recently identified as a key structure for locomotion and gait control  ...  To study the lateral mesencephalus, we used fMRI in 15 right-handed healthy volunteers performing two tasks: imagine walking in a hallway and imagine an object moving along the same hallway.  ...  area 40), a part of left somatosensory area (Brodmann area 2) and right supramarginal gyrus (Brodmann area 40), a cluster of activation in the dorsolateral prefrontal cortex and a part of premotor area  ... 
doi:10.1523/jneurosci.0509-12.2012 pmid:22764247 pmcid:PMC6622238 fatcat:wpbtaajb6zd37aq2py5t7zvst4

Cortical Flattening Applied to High-Resolution 18F-FDG PET

J. C. Klein, K. Herholz, K. Wienhard, W.-D. Heiss
2007 Journal of Nuclear Medicine  
They are fast and typically require little manual interaction, but, unfortunately, it is difficult to achieve a good match between cortical areas in volume space, especially where folding patterns vary  ...  This type of registration has been demonstrated to provide better matching of congruent cortical structures than volume methods and, thus, offers a potentially more robust way of analyzing PET data.  ...  Spheric representations were warped to the Human Colin atlas (24), a single-subject atlas containing a manual parcellation into Brodmann areas using gross anatomic landmarks.  ... 
doi:10.2967/jnumed.107.044669 pmid:18077518 fatcat:7jtkjnldivbbjc3bcwvrgoffi4

The effects of tool holding on body schema during motor imagery: a near-infrared spectroscopy study

Tsubasa Oikawa, Daisuke Hirano, Takamichi Taniguchi, Hitoshi Maruyama
2017 Journal of Physical Therapy Science  
Regions of targets were Brodmann areas 6 which were a motor-related region, 44/45 and 39/40 which taken on the role of forming the body schema.  ...  [Results] When using their dominant right hands, task-related increases in oxy-Hb were prominent in Brodmann areas 44/45 and 39/40 when imagining writing while actually holding the pen than when not.  ...  We anatomically labeled the estimated locations using a macroanatomical brain atlas (LBPA40) 28) and Brodmann's atlas 29) .  ... 
doi:10.1589/jpts.29.702 pmid:28533613 pmcid:PMC5430276 fatcat:4zsomeiqajcnxcmhikcjrexlx4
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