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An overview of biomedical platforms for managing research data
2021
Journal of Data, Information and Management
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Managing biomedical Big Data will require the development of strategies that can efficiently leverage public cloud computing resources. ...
Several web-based platforms are available for researchers to access services and tools for biomedical research. ...
Commercial biomedical platforms (e.g., DNAnexus) also provide a secure cloud computing environment for analyzing and integrating phenotypic, clinical, and genomic data (https://www.dnanexus.com/). ...
doi:10.1007/s42488-020-00040-0
fatcat:itiji5ifu5hjhhcjvtzwz6jq6e
Eleven quick tips for architecting biomedical informatics workflows with cloud computing
2018
PLoS Computational Biology
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In this article, we present 11 quick tips for architecting biomedical informatics workflows on compute clouds, distilling knowledge gained from experience developing, operating, maintaining, and distributing ...
This is a PLOS Computational Biology Education paper. PLOS Computational Biology | https://doi. ...
Cloud computing providers often offer fully managed services for version-control hosting, allowing researchers, teams, and even whole institutions to maintain private collections of repositories without ...
doi:10.1371/journal.pcbi.1005994
pmid:29596416
pmcid:PMC5875741
fatcat:p4r7k2qqirh7xkfjvddaq53z44
Cloud computing applications for biomedical science: A perspective
2018
PLoS Computational Biology
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Cloud computing offers users pay-as-you-go access to services such as hardware infrastructure, platforms, and software for solving common biomedical computational problems. ...
For certain types of biomedical applications, cloud computing has emerged as an alternative to locally maintained traditional computing approaches. ...
Sean Davis, Center for Cancer Research, National Cancer Institute; Ms. Andrea Norris, Director, Center for Information Technology; and Dr. ...
doi:10.1371/journal.pcbi.1006144
pmid:29902176
pmcid:PMC6002019
fatcat:wfvdmkpytnbfbih27knmldrcyy
Challenges and Solutions for Internet of Things Driven by IPv6
2016
KSII Transactions on Internet and Information Systems
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Two smart living applications, a biomedical application and a smart building application, are proposed. ...
Based on the analytical results, the policy decision module processes the data in the device or in the cloud computing environment. ...
In the IoT environment, sensing devices collect environmental information, which is transmitted via a network to the middleware or cloud for computing and management. ...
doi:10.3837/tiis.2016.02.001
fatcat:v6zdaxnqkjdclglsetfuwquwuy
Design and Application of Intelligent Cloud Dis-ease-Diagnostic System Based on Non-Coding Amino Acid Mass Spectrometry
2020
Biomedical Journal of Scientific & Technical Research
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Mass spectrogram contains a lot of information [7] . If we use computer image processing technology to process it, it is still at the level of analysis and processing. ...
Then apply for cloud diagnosis service to cloud diagnosis service platform and pay for it, and then submit sample mass spectrum data. C. ...
The operation process of cloud diagnosis service platform ( Figure 2 ) is as follows: A. ...
doi:10.26717/bjstr.2020.24.004001
fatcat:wlqlqnjh4zaypinty2kxoo3vka
Big Biomedical data as the key resource for discovery science
2015
JAMIA Journal of the American Medical Informatics Association
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We have prototyped integration with analysis services and biomedical digital asset management system 17 services to explore the ability to provide higher-level abstractions via a distributed data cloud ...
What BDDS has done BDDS investigators have applied Globus services 16 to a range of biomedical domains, deploying and operating services that have been used to move and share imaging, genomic, and proteomic ...
doi:10.1093/jamia/ocv077
pmid:26198305
pmcid:PMC5009918
fatcat:mkyc2zhcsbahllwbj6yfo6jf2e
Enabling Large-Scale Biomedical Analysis in the Cloud
2013
BioMed Research International
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Recent progress in high-throughput instrumentations has led to an astonishing growth in both volume and complexity of biomedical data collected from various sources. ...
Cloud computing is an alternative to crack the nut because it gives concurrent consideration to enable storage and high-performance computing on large-scale data. ...
A solution to power the cloud infrastructure for digital imaging communication in medicine (DICOM) is introduced as a robust cloud-based service [38] . ...
doi:10.1155/2013/185679
pmid:24288665
pmcid:PMC3832998
fatcat:zi7vkjnqczbx3gydrgbdbbmwhe
Translational Biomedical Informatics in the Cloud: Present and Future
2013
BioMed Research International
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In this paper we demonstrated the utility and promise of cloud computing for tackling the big data problems. ...
We also outline our vision that cloud computing could be an enabling tool to facilitate translational bioinformatics research. ...
a niche for personalized cancer management. ...
doi:10.1155/2013/658925
pmid:23586054
pmcid:PMC3613081
fatcat:dmpe2jfwxvaoxoagpkhwu4gnnu
Data Lakes, Clouds and Commons: A Review of Platforms for Analyzing and Sharing Genomic Data
[article]
2018
arXiv
pre-print
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Data commons collate data with cloud computing infrastructure and commonly used software services, tools and applications to create biomedical resources for the large-scale management, analysis, harmonization ...
We review software platforms for managing, analyzing and sharing genomic data, with an emphasis on data commons, but also covering data ecosystems and data lakes. ...
A working definition of a data cloud for biomedical data is a cloud computing platform [6] that manages and analyzes biomedical data and, usually, integrates the security and compliance required to work ...
arXiv:1809.01699v2
fatcat:wh2jq5nlenbapppiuthdxerccm
Data Lakes, Clouds, and Commons: A Review of Platforms for Analyzing and Sharing Genomic Data
2019
Trends in Genetics
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Data commons collate data with cloud computing infrastructure and commonly used software services, tools, and applications to create biomedical resources for the large-scale management, analysis, harmonization ...
We review software platforms for managing, analyzing, and sharing genomic data, with an emphasis on data commons, but also cover data ecosystems and data lakes. ...
A working definition of a data cloud for biomedical data is a cloud computing platform [6] that manages and analyzes biomedical data and, usually, integrates the security and compliance required to work ...
doi:10.1016/j.tig.2018.12.006
pmid:30691868
pmcid:PMC6474403
fatcat:fi5wkfpotrf4lhdffvg6vxldqa
Cyclone: A Platform For Data Intensive Scientific Applications In Heterogeneous Multi-Cloud/Multi-Provider Environment
2016
Zenodo
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This paper presents results of the ongoing development of the CYCLONE as a platform for scientific applications in heterogeneous multi-cloud/multi-provider environment. ...
The paper provides information about selected use cases implementation using SlipStream cloud automation and management platform with application recipe example. ...
Performing the analysis of collections of genomes requires large computing resources that can distributed over several computers, generally the computing nodes of a cluster. ...
doi:10.5281/zenodo.243122
fatcat:3u4evra2dffepfuqf7coblakqi
Cyclone: A Platform For Data Intensive Scientific Applications In Heterogeneous Multi-Cloud/Multi-Provider Environment
2016
Zenodo
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This paper presents results of the ongoing development of the CYCLONE as a platform for scientific applications in heterogeneous multi-cloud/multi-provider environment. ...
The paper provides information about selected use cases implementation using SlipStream cloud automation and management platform with application recipe example. ...
Performing the analysis of collections of genomes requires large computing resources that can distributed over several computers, generally the computing nodes of a cluster. ...
doi:10.5281/zenodo.59160
fatcat:dxjh7l6ih5cvbhe5aweq3b5wfu
Cloud Computing in Healthcare and Biomedicine
2015
Scalable Computing : Practice and Experience
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Cloud Computing offers large scalable computing and storage, data sharing, on-demand anytime and anywhere access to resources and applications, and it supports easy but powerful distributed computing models ...
This paper reviews main cloud-based healthcare and biomedicine applications; with a special focus on healthcare, biomedicine and bioinformatics solutions and underlines main issues and problems related ...
In [73] a cloud computing based Voice over IP (VoIP) service for diabetic patients self care management, is presented. ...
doi:10.12694/scpe.v16i1.1057
fatcat:k5s2o37zcrge5pvbwimhotbsca
Corbel Report On Models And Pilot Designs For Sustainable Scalable Cloud-Based Provision Of Data Access And Compute Across Infrastructures
2017
Zenodo
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Task 3 in Work Package 6 addresses the secure data management and compute needs of service providers dealing with data that needs to be access controlled, for example human identifiable data such as genome ...
As first deliverable we here report on models and pilot designs for sustainable scalable cloud-based provision of data and compute across infrastructures, providing guidance to BMS infrastructure development ...
Services include local and federated data access modes for managed data, identity management for users and dataset owners, and access to/from secure computational (grid/cloud) environments in which to ...
doi:10.5281/zenodo.376279
fatcat:qrwc2azvjzgl5iqt6swa65bo2m
Telemedicine work station using computer communication network
IJARCCE - Computer and Communication Engineering
2015
IJARCCE
IJARCCE - Computer and Communication Engineering
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This paper explains internet based Telemedicine workstation Setup Hybrid computing (Telemedicine computing, Cloud computing, Grid computing, Cluster computing) can be maintained complex Big Data storage ...
Cloud computing Technology can be stored increasing large number of medical data and reduce 70% cost of server in Hospitals. ...
., R.G Suresh Kumar , Head of the Computer science department, Rajiv Gandhi college of Engineering and Technology, Puducherry, India. They Guide to Telemedicine base station of center. ...
doi:10.17148/ijarcce.2015.4185
fatcat:76flkxz5azerxd7qrbfraez6p4
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