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A 281 Tflops calculation for X-ray protein structure analysis with special-purpose computers MDGRAPE-3

Yousuke Ohno, Makoto Sakata, Makoto Taiji, Eiji Nishibori, Tetsu Narumi, Takahiro Koishi, Tahir H. Tahirov, Hideo Ago, Masashi Miyano, Ryutaro Himeno, Toshikazu Ebisuzaki
2007 Proceedings of the 2007 ACM/IEEE conference on Supercomputing - SC '07  
In this calculation we used MDGRAPE-3, special-purpose computer for molecular simulations, with the peak performance of 752 Tflops.  ...  We have achieved a sustained calculation speed of 281 Tflops for the optimization of the 3-D structures of proteins from the X-ray experimental data by the Genetic Algorithm -Direct Space (GA-DS) method  ...  Acknowledgement We thank A. Suenaga, N. Okimoto and N. Futatsugi for the development of MDGRAPE-3. E. N. M. S. thanks S. Natsume for the help in development of GA -DS system. E. N. and M. S. thank M.  ... 
doi:10.1145/1362622.1362698 dblp:conf/sc/OhnoNNKTAMHEST07 fatcat:nuxu7fvdbjhzfou7btd4dfkiee