Additional file 2 of Transfer learning between preclinical models and human tumors identifies a conserved NK cell activation signature in anti-CTLA-4 responsive tumors
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by
Emily F. Davis-Marcisak,
Allison A. Fitzgerald,
Michael D. Kessler,
Ludmila Danilova,
Elizabeth M. Jaffee,
Neeha Zaidi,
Louis M. Weiner,
Elana J Fertig
2021
Abstract
Additional file 2: Table S1. CoGAPS 21 pattern matrix with pattern weights for each cell. Table S2. FDR adjusted gene set statistics for all 21 CoGAPS patterns. Table S3. Differentially expressed genes across pseudotime in NK cells collected from tumors treated with anti-CTLA-4. Table S4. Correlation values and p-values for each of the 21 CoGAPS patterns and the CIBERSORT NK cell activation signature. Table S5. Correlation values and p-values for CIBERSORT cell type estimation and CTLA-4 expression in tumors from TCGA.
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