[14_CR1]
via fatcat-pubmed
|
The Culture, Sexual and Asexual Reproduction, and Growth of the Sea Anemone Nematostella vectensis
C. Hand,
K. R. Uhlinger
1992
The Biological Bulletin
doi:10.2307/1542110
pmid:29303672
|
web.archive.org
[PDF]
|
[14_CR2]
via crossref
|
Comparison of developmental trajectories in the starlet sea anemone Nematostella vectensis: embryogenesis, regeneration, and two forms of asexual fission
Adam M. Reitzel,
Patrick M. Burton,
Cassandra Krone,
John R. Finnerty
2007
Invertebrate biology
doi:10.1111/j.1744-7410.2007.00081.x
|
|
[14_CR3]
via crossref
|
Cell proliferation is necessary for the regeneration of oral structures in the anthozoan cnidarian Nematostella vectensis
Yale J Passamaneck,
Mark Q Martindale
2012
BMC Developmental Biology
doi:10.1186/1471-213x-12-34
pmcid:PMC3553063
pmid:23206430
|
web.archive.org
[PDF]
|
[14_CR4]
via fatcat-pubmed
|
A staging system for the regeneration of a polyp from the aboral physa of the anthozoan CnidarianNematostella vectensis
Patricia E. Bossert,
Matthew P. Dunn,
Gerald H. Thomsen
2013
Developmental Dynamics
doi:10.1002/dvdy.24021
pmid:23913838
|
|
[14_CR5]
via crossref
|
Characterization of Morphological and Cellular Events Underlying Oral Regeneration in the Sea Anemone, Nematostella vectensis
Aldine Amiel,
Hereroa Johnston,
Karine Nedoncelle,
Jacob Warner,
Solène Ferreira,
Eric Röttinger
2015
International Journal of Molecular Sciences
doi:10.3390/ijms161226100
pmcid:PMC4691047
pmid:26633371
|
web.archive.org
[PDF]
|
[14_CR6]
via fatcat-pubmed
|
Sea Anemone Genome Reveals Ancestral Eumetazoan Gene Repertoire and Genomic Organization
N. H. Putnam,
M. Srivastava,
U. Hellsten,
B. Dirks,
J. Chapman,
A. Salamov,
A. Terry,
H. Shapiro
(+ more)
2007
Science
doi:10.1126/science.1139158
pmid:17615350
|
web.archive.org
[PDF]
|
[14_CR7]
via fatcat-pubmed
|
Evolutionary conservation of the eumetazoan gene regulatory landscape
M. Schwaiger,
A. Schonauer,
A. F. Rendeiro,
C. Pribitzer,
A. Schauer,
A. F. Gilles,
J. B. Schinko,
E. Renfer
(+ more)
2014
Genome Research
doi:10.1101/gr.162529.113
pmcid:PMC3975063
pmid:24642862
|
web.archive.org
[PDF]
|
[14_CR8]
via fatcat-pubmed
|
FGF signalling controls formation of the apical sensory organ in the cnidarian Nematostella vectensis
F. Rentzsch,
J. H. Fritzenwanker,
C. B. Scholz,
U. Technau
2008
Development
doi:10.1242/dev.020784
pmid:18441276
|
web.archive.org
[PDF]
|
[14_CR9]
via fatcat-pubmed
|
A Framework for the Establishment of a Cnidarian Gene Regulatory Network for "Endomesoderm" Specification: The Inputs of ß-Catenin/TCF Signaling
Eric Röttinger,
Paul Dahlin,
Mark Q. Martindale,
Mary C. Mullins
2012
PLoS Genetics
doi:10.1371/journal.pgen.1003164
pmcid:PMC3531958
pmid:23300467
|
web.archive.org
[PDF]
|
[14_CR10]
via fatcat-pubmed
|
Microinjection of mRNA or morpholinos for reverse genetic analysis in the starlet sea anemone, Nematostella vectensis
Michael J Layden,
Eric Röttinger,
Francis S Wolenski,
Thomas D Gilmore,
Mark Q Martindale
2013
Nature Protocols
doi:10.1038/nprot.2013.009
pmcid:PMC4805419
pmid:23579781
|
web.archive.org
[PDF]
|
[14_CR11]
via fatcat-pubmed
|
Cas9-mediated excision ofNematostella brachyurydisrupts endoderm development, pharynx formation and oral-aboral patterning
Marc D. Servetnick,
Bailey Steinworth,
Leslie S. Babonis,
David Simmons,
Miguel Salinas-Saavedra,
Mark Q. Martindale
2017
Development
doi:10.1242/dev.145839
pmcid:PMC5592810
pmid:28705897
|
web.archive.org
[PDF]
|
[14_CR12]
via fatcat-pubmed
|
Pre-bilaterian origin of the blastoporal axial organizer
Yulia Kraus,
Andy Aman,
Ulrich Technau,
Grigory Genikhovich
2016
Nature Communications
doi:10.1038/ncomms11694
pmcid:PMC4895019
pmid:27229764
|
web.archive.org
[PDF]
|
[14_CR13]
via crossref
|
TALEN and CRISPR/Cas9-mediated genome editing in the early-branching metazoan Nematostella vectensis
Aissam Ikmi,
Sean A. McKinney,
Kym M. Delventhal,
Matthew C. Gibson
2014
Nature Communications
doi:10.1038/ncomms6486
pmid:25417547
|
web.archive.org
[PDF]
|
[14_CR14]
via fatcat-pubmed
|
Fischer A, Smith J. Nematostella high-density RNAseq time-course. 2013
|
|
[14_CR15]
via fatcat-pubmed
|
A quantitative reference transcriptome for Nematostella vectensis early embryonic development: a pipeline for de novo assembly in emerging model systems
Sarah Tulin,
Derek Aguiar,
Sorin Istrail,
Joel Smith
2013
EvoDevo
doi:10.1186/2041-9139-4-16
pmcid:PMC3748831
pmid:23731568
|
web.archive.org
[PDF]
|
[14_CR16]
via crossref
|
Characterization of differential transcript abundance through time during Nematostella vectensis development
Rebecca Helm,
Stefan Siebert,
Sarah Tulin,
Joel Smith,
Casey Dunn
2013
BMC Genomics
doi:10.1186/1471-2164-14-266
pmcid:PMC3680055
pmid:23601508
|
web.archive.org
[PDF]
|
[14_CR17]
via fatcat-pubmed
|
NvERTx: a gene expression database to compare embryogenesis and regeneration in the sea anemoneNematostella vectensis
Jacob F. Warner,
Vincent Guerlais,
Aldine R. Amiel,
Hereroa Johnston,
Karine Nedoncelle,
Eric Röttinger
2018
Development
doi:10.1242/dev.162867
pmid:29739837
|
web.archive.org
[PDF]
|
[14_CR18]
via crossref-grobid
|
Nematostella vectensis transcriptome and gene models v2
D Fredman
,
M Schwaiger
,
F Rentzsch
,
F Rentzsch
,
U Technau
2013
|
|
[14_CR19]
via crossref
|
FastQ Screen: A tool for multi-genome mapping and quality control
Steven W. Wingett,
Simon Andrews
2018
F1000Research
doi:10.12688/f1000research.15931.2
pmcid:PMC6124377
pmid:30254741
|
web.archive.org
[PDF]
|
[14_CR20]
via crossref
|
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger,
Marc Lohse,
Bjoern Usadel
2014
Computer applications in the biosciences : CABIOS
doi:10.1093/bioinformatics/btu170
pmcid:PMC4103590
pmid:24695404
|
archive.org
[PDF]
|
[14_CR21]
via crossref
|
Martin M (2011) Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBNetjournal 17:10–12
|
|
[14_CR22]
via crossref
|
HISAT: a fast spliced aligner with low memory requirements
Daehwan Kim,
Ben Langmead,
Steven L Salzberg
2015
Nature Methods
doi:10.1038/nmeth.3317
pmcid:PMC4655817
pmid:25751142
|
web.archive.org
[PDF]
|
[14_CR23]
via crossref
|
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin,
Carrie A. Davis,
Felix Schlesinger,
Jorg Drenkow,
Chris Zaleski,
Sonali Jha,
Philippe Batut,
Mark Chaisson
(+ more)
2012
Computer applications in the biosciences : CABIOS
doi:10.1093/bioinformatics/bts635
pmcid:PMC3530905
pmid:23104886
|
web.archive.org
[PDF]
|
[14_CR24]
via crossref
|
Fast gapped-read alignment with Bowtie 2
Ben Langmead,
Steven L Salzberg
2012
Nature Methods
doi:10.1038/nmeth.1923
pmcid:PMC3322381
pmid:22388286
|
web.archive.org
[PDF]
|
[14_CR25]
via crossref
|
Fast and accurate short read alignment with Burrows-Wheeler transform
H. Li,
R. Durbin
2009
Bioinformatics
doi:10.1093/bioinformatics/btp324
pmcid:PMC2705234
pmid:19451168
|
web.archive.org
[PDF]
|
[14_CR26]
via crossref
|
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
Y. Liao,
G. K. Smyth,
W. Shi
2013
Bioinformatics
doi:10.1093/bioinformatics/btt656
pmid:24227677
|
web.archive.org
[PDF]
|
[14_CR27]
via crossref
|
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
Bo Li,
Colin N Dewey
2011
BMC Bioinformatics
doi:10.1186/1471-2105-12-323
pmcid:PMC3163565
pmid:21816040
|
web.archive.org
[PDF]
|
[14_CR28]
via crossref
|
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I Love,
Wolfgang Huber,
Simon Anders
2014
Genome Biology
doi:10.1186/s13059-014-0550-8
pmcid:PMC4302049
pmid:25516281
|
web.archive.org
[PDF]
|
[14_CR29]
via fatcat-pubmed
|
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
M. D. Robinson,
D. J. McCarthy,
G. K. Smyth
2009
Bioinformatics
doi:10.1093/bioinformatics/btp616
pmcid:PMC2796818
pmid:19910308
|
web.archive.org
[PDF]
|
[14_CR30]
via crossref
|
The sva package for removing batch effects and other unwanted variation in high-throughput experiments
Jeffrey T. Leek,
W. Evan Johnson,
Hilary S. Parker,
Andrew E. Jaffe,
John D. Storey
2012
Computer applications in the biosciences : CABIOS
doi:10.1093/bioinformatics/bts034
pmcid:PMC3307112
pmid:22257669
|
web.archive.org
[PDF]
|